Fixed Makefile

Projet/CODE/apm/Makefile

-SRCD=src
-OBJD=obj
-INCLUDED=include
+ICLUDED=include
 
 CC=gcc
-CFLAGS=-O3 -I $(INCLUDED)
+CFLAGS=-O3 -I $(INCLUDED) -pg -g
 LDFLAGS=
 
-OBJ=$(OBJD)/apm.o
+OBJ=obj/apm.o
 
 .PHONY: all
-all: apm apm_omp apm_gpu
+all: dir apm apm_omp #apm_gpu
 
-$(OBJD):
-	mkdir -p $(OBJD)
+dir:
+	mkdir -p obj
 
-$(OBJD)/%.o: $(OBJD) $(SRCD)/%.c
+obj/%.o: src/%.c
 	$(CC) $(CFLAGS) -c -o $@ $^
 
-apm: apm.o
+apm: obj/apm.o
 	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ $^
 
-apm_omp:
-	$(CC) $(CFLAGS) $(LDFLAGS) -p $@ $^
+apm_omp: obj/apm_omp.o
+	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ $^
 
 apm_gpu:
-	$(CC) $(CFLAGS) $(LDFLAGS) -p $@ $^
+	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ $^
 
-.PHHONY: clean
+.PHONY: clean
 clean:
-	rm -rf apm apm_omp apm_gpu $(OBJD)
+	rm -rf apm apm_omp apm_gpu obj/ *.out

Projet/CODE/apm/dna/small_chrY_no_return.fa

+AGAAGAGCACCTGGTTGATAACCCAGTTCCCATCTGGGATTTAGGGGACCTGGACAGCCCGGAAAATGAGCTCCTCATCTCTAACCCAGTTCCCCTGTGGGGATTTAGGGGACCAGGGACAGCCCGTTGCATGAGCCCCTGGACTCTAACCCAGTTCCCTTCTGGAATTTAGGGGCCCTGGGACAGCCCTGTACATGAGCTCCTGGTCTGTAACACAGTTCCCCTGTGGGGATTTAGGGACTTGGGCCTTCTGTCTTTGGGATCTACTCTCTATGGGCCACACAGATATGTCTTCCAACTTCCCTACACAGGGGGGACTTCAAAGAGTGCCTTGAGCTGATCTGGTGATTGCTTTTTTGTACTGTTATTTATCTTATTCTTTTCATTGTGAGGTACTGATGCAAACACTTTGTACGAAAAGGTCTTTCTCATCTCGGGAGTCCCCGTCTATTTGTCCCGGTCCCTGTTAACCCAGTCCCCGACAGGAGCCCCTTCTGCACCTTGAGCTCTCACCACTCACCGTCCATCCAGCCCCAGCTCTGCCTGCAACCCACCCATCCCTGGGACTCGGGCCTCCCCTCTCTAGTGGTCTGGTCATCAGGCCAGGGGCACGTGGAAGAAGCTATCGTGGCAAAGGGAGCAGTCATATCCCCAAAATCTGTGGTTGGTTTACCACCACCATGGAAACCCCAGGGTGGGACTCTAGTTTCAGGTTGGAGCTGAGCCCTGTCGGGAATGAGCTTTCCCCAGCTATGGCTTCTTGGGGCCCCTGTGCCCTGAGCTGTGTCTCCCAGCATCGGGTCCCCACCATGCATATGGCCCACTCAGGCACAGTGCCGCGATGGCTGCATGCGTGAGGGGGGCCTGGGCCCAGGGCTGGGAGTCCTTTGTGTCTCATGGCCATGATTGTCCTTCCGAGTATGATATGGTGGCCAATTTCTTTTATTCTGTCGTTCAGAGTGAGTAAATGATGTAGAGTTCATGCAGAAAAAAATACAACAAAAACCAAGGGAACATAGAATTGGAAAACGCGTCACAGCAATGAGTTAAATAGGTAACAAATTTCATCATTTGAAGAAAGACTTAGAGTGCCAAAAGTGCCTCTTAAGTCTCCTTTAAAAAGTAGCAAAATTCATCCCTGAAGAAGCATCTTGGCCTTTTTCATGTACTCAGAGTGCTGGTGAAGAACAAAGATTGCTGAAACATTATGTACCTAACAGCGTTACAGGGTGTAGATAACACACTGGAAAACCTGGTCGTTACAGTGGACATATTCCAGGAAGTCCTTGCCTGAGGTTTT

Projet/CODE/apm/src/apm.c

@@ -28,7 +28,6 @@ read_input_file( char * filename, int * size )
         return NULL ;
     }
 
-
     /* Get the number of characters in the textfile */
     fsize = lseek(fd, 0, SEEK_END);
     lseek(fd, 0, SEEK_SET);