From e56f01b7a733922cc67601d32f54f70d9b9bb83a Mon Sep 17 00:00:00 2001
From: Enzo De Carvalho Bittencourt <ezdecarvalho@gmail.com>
Date: Mon, 11 Dec 2023 10:45:00 +0100
Subject: [PATCH] Fixed Makefile
---
Projet/CODE/apm/Makefile | 28 ++++++++++-----------
Projet/CODE/apm/dna/small_chrY_no_return.fa | 1 +
Projet/CODE/apm/src/apm.c | 1 -
3 files changed, 14 insertions(+), 16 deletions(-)
create mode 100644 Projet/CODE/apm/dna/small_chrY_no_return.fa
diff --git a/Projet/CODE/apm/Makefile b/Projet/CODE/apm/Makefile
index 0f3cf7c..ecb8e18 100644
--- a/Projet/CODE/apm/Makefile
+++ b/Projet/CODE/apm/Makefile
@@ -1,31 +1,29 @@
-SRCD=src
-OBJD=obj
-INCLUDED=include
+ICLUDED=include
CC=gcc
-CFLAGS=-O3 -I $(INCLUDED)
+CFLAGS=-O3 -I $(INCLUDED) -pg -g
LDFLAGS=
-OBJ=$(OBJD)/apm.o
+OBJ=obj/apm.o
.PHONY: all
-all: apm apm_omp apm_gpu
+all: dir apm apm_omp #apm_gpu
-$(OBJD):
- mkdir -p $(OBJD)
+dir:
+ mkdir -p obj
-$(OBJD)/%.o: $(OBJD) $(SRCD)/%.c
+obj/%.o: src/%.c
$(CC) $(CFLAGS) -c -o $@ $^
-apm: apm.o
+apm: obj/apm.o
$(CC) $(CFLAGS) $(LDFLAGS) -o $@ $^
-apm_omp:
- $(CC) $(CFLAGS) $(LDFLAGS) -p $@ $^
+apm_omp: obj/apm_omp.o
+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $^
apm_gpu:
- $(CC) $(CFLAGS) $(LDFLAGS) -p $@ $^
+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $^
-.PHHONY: clean
+.PHONY: clean
clean:
- rm -rf apm apm_omp apm_gpu $(OBJD)
+ rm -rf apm apm_omp apm_gpu obj/ *.out
diff --git a/Projet/CODE/apm/dna/small_chrY_no_return.fa b/Projet/CODE/apm/dna/small_chrY_no_return.fa
new file mode 100644
index 0000000..f743fe4
--- /dev/null
+++ b/Projet/CODE/apm/dna/small_chrY_no_return.fa
@@ -0,0 +1 @@
+AGAAGAGCACCTGGTTGATAACCCAGTTCCCATCTGGGATTTAGGGGACCTGGACAGCCCGGAAAATGAGCTCCTCATCTCTAACCCAGTTCCCCTGTGGGGATTTAGGGGACCAGGGACAGCCCGTTGCATGAGCCCCTGGACTCTAACCCAGTTCCCTTCTGGAATTTAGGGGCCCTGGGACAGCCCTGTACATGAGCTCCTGGTCTGTAACACAGTTCCCCTGTGGGGATTTAGGGACTTGGGCCTTCTGTCTTTGGGATCTACTCTCTATGGGCCACACAGATATGTCTTCCAACTTCCCTACACAGGGGGGACTTCAAAGAGTGCCTTGAGCTGATCTGGTGATTGCTTTTTTGTACTGTTATTTATCTTATTCTTTTCATTGTGAGGTACTGATGCAAACACTTTGTACGAAAAGGTCTTTCTCATCTCGGGAGTCCCCGTCTATTTGTCCCGGTCCCTGTTAACCCAGTCCCCGACAGGAGCCCCTTCTGCACCTTGAGCTCTCACCACTCACCGTCCATCCAGCCCCAGCTCTGCCTGCAACCCACCCATCCCTGGGACTCGGGCCTCCCCTCTCTAGTGGTCTGGTCATCAGGCCAGGGGCACGTGGAAGAAGCTATCGTGGCAAAGGGAGCAGTCATATCCCCAAAATCTGTGGTTGGTTTACCACCACCATGGAAACCCCAGGGTGGGACTCTAGTTTCAGGTTGGAGCTGAGCCCTGTCGGGAATGAGCTTTCCCCAGCTATGGCTTCTTGGGGCCCCTGTGCCCTGAGCTGTGTCTCCCAGCATCGGGTCCCCACCATGCATATGGCCCACTCAGGCACAGTGCCGCGATGGCTGCATGCGTGAGGGGGGCCTGGGCCCAGGGCTGGGAGTCCTTTGTGTCTCATGGCCATGATTGTCCTTCCGAGTATGATATGGTGGCCAATTTCTTTTATTCTGTCGTTCAGAGTGAGTAAATGATGTAGAGTTCATGCAGAAAAAAATACAACAAAAACCAAGGGAACATAGAATTGGAAAACGCGTCACAGCAATGAGTTAAATAGGTAACAAATTTCATCATTTGAAGAAAGACTTAGAGTGCCAAAAGTGCCTCTTAAGTCTCCTTTAAAAAGTAGCAAAATTCATCCCTGAAGAAGCATCTTGGCCTTTTTCATGTACTCAGAGTGCTGGTGAAGAACAAAGATTGCTGAAACATTATGTACCTAACAGCGTTACAGGGTGTAGATAACACACTGGAAAACCTGGTCGTTACAGTGGACATATTCCAGGAAGTCCTTGCCTGAGGTTTT
diff --git a/Projet/CODE/apm/src/apm.c b/Projet/CODE/apm/src/apm.c
index f83b72c..1c3e60c 100644
--- a/Projet/CODE/apm/src/apm.c
+++ b/Projet/CODE/apm/src/apm.c
@@ -28,7 +28,6 @@ read_input_file( char * filename, int * size )
return NULL ;
}
-
/* Get the number of characters in the textfile */
fsize = lseek(fd, 0, SEEK_END);
lseek(fd, 0, SEEK_SET);
--
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